Search results for "lecture" ( 574 records found )

Recorded on November 13, 2013.

Q & A Session with Nicole Mitchell and Douglas Haynes

For more information and access to courses, lectures, and teaching material, please visit the official UC Irvine OpenCourseWare website at: http://ocw.uci.edu

Recorded on Thursday, October 14, 2010, the first Annual Al Meyerhoff Public Interest Lecture, delivered by Connie Rice, Esq.

Connie Rice, an outspoken litigator and co-founder of the public policy and legal action group Advancement Project, has very clear views on equal rights and our democracy. She has spent her career fighting for social justice, urban peace, equal opportunity and upward mobility for the poor and disadvantaged, or as Rice and her colleagues call them, "those left behind in America."

Richard Lazarus is the Howard J. and Katherine W. Aibel Professor of Law at Harvard University, where he teaches Environmental Law, Natural Resources Law, Supreme Court Advocacy, and Torts.

In this inaugural lecture recorded on February 7, 2012 for the Center on Land, Environment, & Natural Resources (CLEANR) at UCI Law, Prof. Lazarus reflected on his experiences as Executive Director of the President's Commission to investigate the Gulf Oil Spill, focusing on the political challenges of running the Commission, the Commission's findings, and subsequent events and lessons related to the disaster.

Prof. Lazarus graduated from Harvard Law School in 1979, and he has a B.S. in Chemistry and a B.A. in economics from the University of Illinois, where he focused on environmental issues.

Recorded on October 8, 2013.

Gregory Weiss, Ph.D. and Reginald M. Penner, Ph.D.

During the last 38 years, cancer treatment has improved greatly, and today, many cancers can be completely cured when they are discovered early, in stages 0 or 1. 

The problem is that, regardless of where the primary cancer occurs in our bodies – lungs, prostate gland, bladder, breasts, etc. – early stage cancers are so small that they produce no symptoms and cannot be seen by X-rays.  In view of this fact, you may be surprised to learn that when your blood and urine are tested during annual physical exams, no tests for cancer are performed.*  So we only rarely detect cancer at its earliest stages, when it can be most easily cured.  This research focuses on solving this problem.

What if you could test yourself for cancer?  Professors Penner and Weiss are developing a new technology for making cheap, disposable, and highly sensitive biosensors capable of detecting cancer in urine and blood.  One goal of their research is to develop a version of this biosensor that resembles a home pregnancy test.  You buy this “wand” over-the-counter in a drug store, pee on it, and it indicates immediately whether you could have early stage cancer of the prostate, bladder, kidneys or perhaps just a urinary tract infection (the symptoms for these are indistinguishable). 

Believe it or not – the key to this technology are benevolent viruses that are engineered to capture specific molecules in your blood or urine that are flags for cancer.  Why viruses?  Well, it’s a long story that Drs. Penner and Weiss would like to share with you in this lecture

UCI BioSci M121: Immunology with Hematology (Fall 2013)
Lec 16. Immunology with Hematology -- T Cell-Mediated Immunity --
View the complete course:
http://ocw.uci.edu/courses/biosci_m121_immunology_with_hematology.html
Instructor: Craig M. Walsh, Ph.D.

License: Creative Commons CC-BY-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: UCI BioSci M121 covers the following topics: Antibodies, antigens, antigen-antibody reactions, cells and tissues of lymphoreticular and hematopoietic systems, and individual and collective components of cell-mediated and humoral immune response.

Recorded on November 4, 2013

Required attribution: Walsh, Craig. Immunology with Hematology M121 (UCI OpenCourseWare: University of California, Irvine), http://ocw.uci.edu/courses/biosci_m121_immunology_with_hematology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 4.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 01. Introduction to Chemical Biology -- Introduction/What is Chemical Biology?
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on January 8, 2013.

Index of Topics:
0:01:12 - Week 1 Overview
0:02:00 - Tuesday's Announcements-Reading and Homework
0:05:46 - What Merits Your Attention
0:09:47 - Course Instructors
0:15:47 - Textbook
0:19:26 - Discussion Sections
0:20:23 - Course Structure
0:24:06 - Grade Calculation
0:25:50 - Tour of the Course Website
0:28:36 - Academic Honesty
0:30:06 - Caution and Responsibility
0:30:30 - What is Chemical Biology?
0:32:20 - Chemical Biology Advances both Chemistry and Biology
0:35:46 - Using Chemistry to Drive Biology
0:38:28 - Evolution underlies Chemical Biology
0:40:44 - Evolution contributes to Chemical Biology
0:42:01 - The Central Dogma of Modern Biology
0:46:54 - What is in a gene?
0:49:03 - The Smallest Gene
0:52:40 - Microcin A is Still Rather Complex
0:53:31 - What is a Genome?
0:54:56 - The Complete Genome Sequence is Just a Start
0:56:30 - Big Differences in Genomes, Same Species
0:57:43 - Similarities and Differences Between Prokaryotic and Eukaryotic Organism
0:58:53 - Nearly Identical Genomes, Very Different People
0:59:14 - Identical Genomes, Different Cells
1:00:33 - Inside a Human Cell
1:00:52 - The Transcriptome
1:02:07 - RNA Splicing Amplifies the Diversity of the Genome
1:03:04 - The Proteome
1:05:30 - Post-Translational Modification Amplifies the Diversity of the Proteome
1:08:06 - Post-Translational Processes
1:09:58 - Combinatorial Assembly Generates Diversity
1:12:51 - How to Calculate Diversity
1:16:40 - Modular Architecture Allows Combinatorial Synthesis

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 02. Introduction to Chemical Biology --Common Tools in Chemical Biology
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on January 10, 2013.

Index of Topics:
Announcements
0:00:49 - Week 1 Overview
0:02:15 - Tuesday's Announcements (Reading and Homework)
0:02:22 - Course Instructors
0:03:11 - Our Story Thus Far...(Thursday)
0:10:06 - To Do the Proposal Assignment Successfully
0:15:15 - Next Week's Plan

Lecture
0:18:39 - Modular Architecture Allows Combinatorial Synthesis
0:22:23 - Diversity in Biology
0:27:26 - Antibodies Assembled by combinatorial Biosynthesis
0:30:40 - Common Tools in Chemical Biology
0:33:18 - Good Experiments Have Both Positive and Negative Controls
0:40:26 - Example: Amplifying DNA with PCR
0:43:53 - Colormetric Indicators
0:47:04 - Fluorophores Allow Visualization of Molecules Inside the Cell
0:52:24 - Assays to Detect Molecules in Solution and Cells
0:55:24 - Cellular Assays for Particular Conditions
0:58:41 - Viruses for Gene Delivery
0:59:21 - Phage Display for Selecting From Vast Libraries of Proteins
1:02:18 - Phage-Displayed Protein Libraries
1:04:33 - Cellular Assays for Particular Conditions (revisited)
1:04:55 - Vast Libraries of DNA and RNA
1:07:09 - Small Molecules Provide Control Over Cell Processes
1:10:26 - Model Organisms for Biology and Chemistry
1:12:00 - M13: Filamentous Bacteriophage
1:12:49- Relative Sizes
1:13:41 - Bacteria Used to Define DNA as Responsible for Transferring Heredity
1:15:15 - Baker's Yeast
1:15:32 - Fruit Fly (Drosophilia)
1:15:54 - Chemical & Behavioral Studies in Drosophila: The Inebriometer

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 03. Introduction to Chemical Biology -- Reactivity and Arrow Pushing
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on January 3, 2013.

Index of Topics:  
Announcements
0:00:14 - Week 2 Synopsis
0:04:00 - Announcements

Lecture
0:05:29 - Our Story to Date on Tuesday...
0:07:01 - What is Life?
0:09:07 - Arrows Depict the Overlap of Molecular Orbitals
0:14:33 - The Clash of Two Possible Wills
0:17:16 - Arrows Depict the Overlap of Molecular Orbitals
0:19:57 - The Three Components of Orbital Overlap
0:21:35 - Arrows Depict the Overlap of Molecular Orbitals (revisited)
0:21:53 - The Three Components of Orbital Overlap (revisited)
0:24:27 - Charge-Charge or Coulombic Effects
0:26:31 - Molecular Orbital Theory Explains the Otherwise Unexplained
0:28:05 - Combining Atomic Orbitals to Make Hybrid Atomic Orbitals
0:34:17 - Combining Hybrid Atomic Orbitals to Make Molecular Orbitals
0:39:56 - Highest Occupied Molecular Orbital
0:41:57 - Lowest Unoccupied Molecular Orbitals (LUMOs)
0:44:08 - Anatomy of an Arrow
0:46:38 - 3 Rules for Mechanistic Arrow-Pushing
0:50:34 - The Rules for Arrow Pushing in Action
0:57:02 - Draw Correct Lewis Structures
0:58:23 - Arrows Start With Bonds or Lone Bairs
1:00:08 - Arrows End on Atoms or Bonds
1:01:27 - H Is Always Attached to Something
1:04:48 - Hydrogen Bonds
1:07:08 - Do Not Use Curved Arrows for Hydrogen Bonds
1:08:58 - Proton Transfers To and From Heteroatoms are Very Fast
1:09:33 - Proton Transfers Require Linear Geometries

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 04. Introduction to Chemical Biology -- Combinatorial Chemistry and Biology
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on January 17, 2013.

Index of Topics:
Announcements
0:00:58 - Week 2 Overview
0:03:19 - Announcements
0:05:04 - Journal Article Report Example

Lecture:
0:28:06 - Our Story To Date on Thursday
0:32:32 - Do Not Use Curved Arrows for Hydrogen Bonds
0:34:00 - The Molecules of Life on Earth
0:34:50 - Ingredients in the Recipe of Life
0:36:32 - Building the Building Blocks of Life
0:37:40 - Chemistry of HCN
0:39:06 - HCN=The Chemistry of Life
0:39:50 - White Board Example
0:50:27 - Formation of DAMN
0:50:40 - Formation of AICN
0:53:32 - Prebiotic Sythesis of Pyrimidine
0:54:57 - Prebiotic Synthesis of D-Ribose from CH2O
0:55:50 - The Benzoin Reaction
0:56:40 - White Board Example or Ribose Rings
1:05:28 - Prebiotic Synthesis of D-Ribose from CH2O
1:06:29 - Oligomers of Nucleotide Subunits
1:08:00 -  The RNA World
1:09:19 - Prebiotic Synthesis of Amino Acids
1:10:27 - Strecker Synthesis of Amino Acids
1:11:10 - Formation of Proteins from Amino Acids
1:11:29 - Non-Covalent Interactions Control All Biology
1:12:35 - Non-Covalent Interactions Dominate Biology
1:13:21 - A Spectrum of Bonding
1:14:34 - Non-Covalent Bonding Equation
1:16:35 - Charge-Charge Interactions
1:18:19 - Caution! Formal Charges are Not the Same as Partial Charges

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 05. Introduction to Chemical Biology --Non-Covalent Interactions, DNA.
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on January 22, 2013.

Index of Topics:
Announcements
0:01:16 - Week 3 Overview
0:02:48 - Announcements
0:06:14 - Office Hours
0:08:50 - Midterm 1 Info

Lecture
0:10:56 - Our Story Thus Far (Thursday)
0:10:58 - Charge-Charge Interactions
0:11:11 - The Lennard-Jones Potential
0:14:28 - Rouges Gallery of Non-Covalent Interactions
0:21:44 - Comparing Energetics
0:25:06 - All Biology Involves Water
0:26:40 - Water next to Hydrophobic Surfaces
0:28:36 - Receptor-Ligand Interactions
0:33:01 - Biooligomers on Earth: Modularity
0:33:48 - Numerical Amplification in Biosynthesis
0:34:35 - Form Follows Function in Biology
0:39:51 - Non-Covalent Bonding Summary
0:43:31 - Structure of DNA: Double Helix
0:44:57 - Structure of DNA: Double Helix, Slide 2
0:46:24 - DNA Structure Sets Up Replication
0:47:42 - Early Attempts at Deciphering the Structure of DNA
0:48:31 - DNA Inside the Cell is Tightly Organized
0:49:02 - The DNA Bases
0:51:39 - DNA Bases: Not That Basic
0:52:40 - The Missing 2-OH of DNA Confers Stability
0:54:24 - White Board Example
0:59:25 - The DNA Bases are Subject to Modification
1:01:39 - Watson-Crick Base Pairs form U-Shape
1:02:35 - The Edges of the DNA Bases Provide a Basis for Molecular Recognition
1:04:02 - Transcription Factors Recognize Specific DNA Sequences
1:04:59 - Forces Holding Together DNA Double Helix
1:06:28 - Base Pairing Requires Hydrogen Bond Donors and Acceptors
1:08:36 - Unnatural Bases Can Shift Recognition
1:10:27 - Chemical Biologists Synthesized DNA With Unnatural Bases
1:12:32 - Stabilization of DNA by Pi-Stacking
1:12:52 - Alternative Base Pairing Also Possible
1:14:13 - DNA Intercalation: Untwisting of DNA
1:14:56 - Examples of DNA Intercalators
1:17:03 - More DNA Intercalators

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 06. Introduction to Chemical Biology -- DNA Reactivity with Small Molecules
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on January 24, 2013.

Index of Topics:
Lecture
0:01:13 - Week 3 Overview
0:01:53 - Examples of DNA Intercalators
0:04:21 - How to Measure and Calculate the Strength of DNA Hybridization
0:07:22 - DNA Self-Assembly Based on Sequence
0:07:51 - Hybridization of DNA
0:09:20 - Short Stretches of DNA & RNA Can Also Fold
0:10:31 - DNA is Wound Into Supercoils
0:11:57 - Would the Real DNA Structure Please Stand Up?
0:12:42 - Storing 1.7m of DNA compactly
0:13:44 - Needed: DNA Gyrase to Untangle the DNA
0:15:53 - Bacterial DNA is Stored in Plasmids
0:18:29 - Antibiotics as Selection Markers
0:22:24 - Eukaryotic DNA is Wrapped Around Nucleosomes
0:22:41 - Covalent Modification of Histone Tails
0:23:50 - Modifications to the Lysine Sidechains of Histones
0:27:24 - Trapoxin as a Highly Specific HDCA-1 Inhibitor
0:28:49 - Biological Polynucleotide Synthesis
0:32:07 - DNA Polymerases Require a Template and Lengthen An Existing Strand
0:34:36 - DNA Polymerases Require, Slide 2
0:39:20 - DNA Polymerase and Reverse Transcriptase
0:42:10 - DNA Polymerase: Dream Machine!
0:42:34 - DNA Polymerase: Dream Machine! Slide 2
0:43:04 - DNA Polymerase: Dream Machine! Slide 3
0:43:11 - DNA Polymerase: Dream Machine! Slide 4
0:43:38 - DNA Polymerase for Amplification of PCR
0:46:41 - DNA Polymerase Summary
0:46:57 - RT Inhibitors
0:49:16 - White Board Example
0:50:08 - RT Inhibitors (revisited)
0:52:15 - A Brief History of Chemical DNA Synthesis
0:54:19 - DNA Synthesis by Repeating Cycles
0:54:22 - Chemical DNA Synthesis
0:56:22 - DNA Synthesis on Solid Support
0:57:01 - The DNA Microarray
0:57:22 - Comparing Two States with Microarrays
0:57:25 - DNA MicroArrays Can Monitor Transcription of Thousands of Genes Simultaneously
0:58:53 - The DNA Microarray (revisited)
0:59:04 - Comparing Two States with Microarrays (revisited)
1:00:06 - DNA Microarrays Can Monitor Transcription of Thousands of Genes Simultaneously (revisited)
1:00:54 - Small Molecule Fingerprinting with DNA Microarrays
1:02:09 - FK506 Fingerprinting
1:03:58 - Analysis of DNA sizes by electrophoresis
1:06:06 - Example of DNA Agarose Gels
1:07:00 - Visualizing DNA in Gels
1:07:12 - Separating DNA by Capillary Electrophoresis
1:07:55 - DNA Sequencing Uses DNA Synthesis
1:10:37 - DNA Biotechnology
1:11:19 - Modifying DNA: Random and Directed

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 07. Introduction to Chemical Biology -- DNA, RNA, and Cancer
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded January 29, 2013.

Index of Topics:
Announcements
0:00:09 - Week 3 Overview
0:01:28 - Office Hours
0:02:51 - Midterm 1 Info
0:06:24 - Announcements

Lecture
0:06:40 - Our Story Thus Far
0:09:48 - Cutting and Pasting DNA
0:12:22 - Restriction Enzymes Cut DNA Specifically
0:15:00 - "Sticky Ends" Left Over from Restriction Enzymes for Pasting in New DNA
0:16:29 - Cutting and Pasting DNA
0:18:42 - Protein Modification by PCR
0:23:15 - UV from Sunlight Cross-Links Thymines
0:25:09 - E. Coli Photolyase
0:26:36 - Protecting Your Cells By Sun Screen
0:28:39 - Psoralens: The Scourge of Margaritaville
0:30:58 - Psoralen Cross-Linked DNA
0:32:16 - Margarita Photodermatitis (image)
0:33:06 - Margarita Photodermatitis
0:33:24 - Cells Must Advance or Die
0:34:57 - DNA as a Big Nucleophile
0:38:26 - Case Study: Omaha, Nebraska-Sept. 10, 1978
0:39:51 - N-nitrosoamines = Potent DNA Alkylating Agents
0:41:13 - The First Human Trials of N,N-Dimethylnitorsoamine
0:42:40 - Bringing Home the Bacon
0:43:37 - Why Bacon's (Mostly) Ok
0:45:00 - Known Carcinogens
0:47:44 - Paradox: Cause and Cure??
0:50:42 - Excision Repair in Humans
0:52:34 - Monofunctional Alkylating Agents: Often Readily Repairable
0:54:23 - Bifunctional Cross-Linking Agent
0:54:58 - Caution! Bifunctional DNA Alkylators
0:55:47 - Excision Repair In Humans
0:56:46 - Missing Or Deficient DNA Repair Proteins
0:57:25 - Hundreds of Mutations Required to Cause Cancer
1:00:39 - The p53 Tumor Suppressor Protein
1:02:05 - Mutations to p53 are Bad News
1:02:52 - p53 Suppressors Tumors
1:03:57 - Sir Percival Pott
1:05:19 - Testicular Cancer
1:06:13 - Testicular Cancer, Slide 2
1:06:56 - P450 Substrates as Potent DNA Alkylators
1:08:24 - Benzopyrene: Pro-Epoxide DNA Alkylators
1:10:18 - Toxins from Molds Growing on Grains
1:11:36 - Nitrogen and Sulfur Mustards
1:13:35 - The Re-Evaluation of RNA's Importance
1:14:41 - What Levene Got Right
1:15:07 - The Re-Evaluation of RNA's Importance
1:15:53 - RNA: Soldier, Sailor, Tinker, Spy

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 08. Introduction to Chemical Biology -- RNA
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on February 5, 2013.

Index of Topics:
Announcements
0:00:21 - Announcements
0:01:24 - Midterm 1 Results
0:03:24 - Office Hours
0:04:28 - Getting Strong Letters of Recommendation
0:15:10 - Getting Strong Letters of Recommendation from Prof. Weiss

Lecture
0:18:00 - Our Story Thus Far
0:21:00 - RNA: Soldier, Sailor, Tinker, Spy
0:22:40 - Differences Between RNA and DNA
0:23:25 - RNA Hydrolysis
0:24:29 - The Ubiquitous RNases
0:27:27 - RNase Mechanism of Action
0:30:38 - How to Shut Down a Very Effective Enzyme
0:33:25 - The 5-methyl Group of Thymine Provides a Chemical Code for DNA
0:36:35 - RNA Bases can be Modified
0:38:14 - RNA Adopts Globular Structures
0:40:14 - Systemizing Structure in RNA
0:43:56 - Canonical RNA Secondary Structures
0:45:46 - Systemizing Structure in RNA (revisited)
0:46:20 - RNA Polymerase Catalyzes mRNA synthesis
0:48:34 - RNA Polymerase
0:50:40 - DNA Primase Provides the RNA Primers for DNA Replication
0:52:01 - DNA Primase Synthesizes a Primer for RNA Polymerase
0:52:27 - Transcription in Action
0:54:01 - Examples of Protein DNA Interactions
0:55:56 - Giddayap! TATA Binding Protein Rides the DNA Double Helix
0:57:19 - RNA Transcription Shut Off By Repressors
0:59:16 - Recognition of DNA by transcription factors
1:05:49 - Zinc Finger Transcription Factors
1:08:36 - Engrailed Transcription Factor
1:10:27 - Leucine Zipper Transcription Factor
1:11:12 - Complexity in Activating DNA Transcription
1:11:59 - Small Molecule Control Over Gene Transcription
1:15:32 - The Yeast Two-Hybrid System Allows in Cell Testing for Binding
1:16:49 - The Yeast Two Hybrid System
1:17:53 - Comparing Bacterial and Eukaryotic mRNA Processing

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 09. Introduction to Chemical Biology -- RNA -- Part 2
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded on February 7, 2013.

Index of Topics:
Announcements
0:00:08 - Week 5 Overview
0:01:44 - Announcements
0:01:50 - Office Hours
0:02:09 - Important Book Report Announcements
0:07:49 - Scientific Writing
0:12:16 - Plagiarism

Lecture
0:21:06 - Our Story Thus Far on Thursday
0:25:41 - RNA: Soldier, Sailor, Tinker, Spy
0:26:04 - Comparing Bacterial and Eukaryotic mRNA Processing
0:27:05 - mRNA Processing in Human Cells
0:28:40 - mRNA Capping in Eukaryotic Cells
0:29:08 - GTP Cap Methylation
0:30:30 - Using PolyA tails to Isolate mRNA
0:34:29 - Eukaryotic Splicing of mRNAs
0:35:25 - Self-Splicing by Some RNA Introns
0:37:38 - RNA Degradation Plays a Major Role
0:40:40 - Therapeutic Anti-Sense
0:42:32 - Modifying the Oligo Backbone
0:44:20 - RNA Interference Used Extensively in the Lab
0:47:57 - Where Peptide Synthesis Starts
0:49:13 - Formation of Peptides by Aminolysis
0:52:49 - The Ribosome Catalyzes Peptide Bond Formation
0:53:46 - Tetracycline Blocks the Ribosome
0:54:51 - Antibiotics Targeting Ribosome and Protein Translation Machinery
0:56:36 - Translation Starts with the Start Codon
0:57:19 - tRNAs Bring Amino Acids to the Ribosome
0:58:26 - The Genetic Code: The Language of the Codons
1:00:33 - Decoding the DNA to Protein Sequence
1:01:43 - How to Load the Amino Acyl tRNA
1:03:50 - Need to Activate the Amino Acid for Loading on the tRNA
1:06:38 - Post-Translational Modification of the N-Terminus
1:07:25 - Inhibiting Methionine Aminopeptidase
1:09:59 - Binding to mRNA Provides Further Regulation of Translation
1:10:59 - Incorporating Unnatural Amino Acids
1:12:38 - Expanding the Protein Palette
1:13:48 - mRNA Aptamer Libraries
1:18:18 - Puromycin Allows Covalent Linkage to the Growing Peptide During Translation

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 10. Introduction to Chemical Biology -- Proteins and Amino Acid Conformations -- Part 1
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded February 12, 2013.

Index of Topics:
Announcements
0:00:08 - Week 6 Overview
0:01:07 - Announcements
0:02:42 - Office Hours
0:03:54 - Careers in Chemical Biology and Health (white board)

Lecture
0:19:40 - Our Story Thus Far
0:22:14 - Proteins: Of Primary Importance
0:23:33 - Must Memorize: 20 aa's, Structures and Abbreviations
0:24:50 - Must Memorize, Slide 2
0:26:31 - Refer to Amino Acids
0:27:24 - Goal: Understand Forces Behind Protein Structure
0:28:38 - Peptides and Protein are Directional
0:32:39 - Useful to Know: pKa Values
0:35:14 - Amino Acid Sidechains Dictate Protein Folding and Protein-Protein Interactions
0:37:09 - Amino Acid Sidechains, Slide 2
0:40:09 - A Close Look at a Protein-Protein Interface
0:42:05 - Peptides Can Make Effective Drugs
0:45:20 - Peptides Can Be the Lead Compounds for Drug Discovery
0:49:29 - Chemical Synthesis of Peptides and Proteins
0:54:41 - Synthesizing Longer Proteins with Native Chemical Ligation
0:59:51 - Protein Splicing to Remove Inteins
1:01:18 - Protein Splicing to Remove Inteins, Slide 2
1:04:31 - Protein Structure: The Sum of Lots of Little Forces
1:06:30 - Geometry of the Hydrogen Bond
1:07:46 - H-Bonds in Proteins
1:09:50 - H-Bonds in a-Helices
1:15:10 - a-Helices Form a Dipole
1:18:27 - a-Helices Form a Dipole, Slide 2

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.

UCI Chem 128 Introduction to Chemical Biology (Winter 2013)
Lec 11. Introduction to Chemical Biology -- Proteins and Amino Acid Conformations -- Part 2
View the complete course: http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html
Instructor: Gregory Weiss, Ph.D.

License: Creative Commons BY-NC-SA
Terms of Use: http://ocw.uci.edu/info.
More courses at http://ocw.uci.edu

Description: This video is part of a 18-lecture undergraduate-level course titled "Introduction to Chemical Biology" taught at UC Irvine by Professor Gregory Weiss. Introduction to the basic principles of chemical biology: structures and reactivity; chemical mechanisms of enzyme catalysis; chemistry of signaling, biosynthesis, and metabolic pathways.
Introduction to Chemical Biology (Chem 128) is part of OpenChem: http://ocw.uci.edu/openchem

Recorded February 14, 2013.

Index of Topics:
Announcements
0:00:06 - Week 6 Overview
0:00:30 - Announcements
0:01:41 - Office Hours
0:02:49 - Proposal Abstract (white board)

Lecture
0:28:13 - Our Story Thus Far on Thursday
0:30:53 - a-Helices Form a Dipole
0:31:09 - B-Sheets Come In Two Flavors
0:32:54 - Forming B-Sheets Into Barrels
0:33:58 - B-Sheets Come In Two Flavors, Slide 2
0:34:39 - Secondary Structure- Backbone Conformations
0:35:32 - Sidechains in B-Sheets Stick Out Perpendicular to the Sheet
0:36:53 - Turns Have Minimal H-Bonds
0:40:26 - Turn Structures
0:40:59 - Can (modestly) Predict Secondary Structure Based on Amino Acid
0:44:40 - Conformational Analysis for the Cognoscente (white board)
0:58:07 - Amino Acids Examples (white board)
1:05:01 - Conformations to Watch For
1:08:19 - Conformations to Watch For, Slide 2
1:09:38 - Allylic Strain Dominates the Protein Backbone
1:11:19 - Allylic Strain Explains Dominance of 2 Types of Protein Secondary Structure
1:13:10 - Disulfide Bonds In Proteins
1:14:32 - Formation of Disulfide Bonds in Proteins
1:14:49 - Glutathione as an Intracellular Thiol Buffer
1:15:07 - Facile Disulfide Exchange Happens Constantly
1:15:34 - Protein Structure
1:15:57 - Protein Organization Hierarchy
1:17:33 - Most Common Protein Structures
1:17:50 - All a-Helical Proteins
1:17:53 - Zn Fingers as Very Common a-Helical Proteins

Required attribution: Weiss, Gregory Introduction to Chemical Biology 128 (UCI OpenCourseWare: University of California, Irvine),  http://ocw.uci.edu/courses/chem_128_introduction_to_chemical_biology.html. [Access date]. License: Creative Commons Attribution-ShareAlike 3.0 United States License.